Everything about data including open source, healthcare data sets and more, in one location.
COVID-19 Open Research Dataset Challenge (CORD-19) General/Infectious disease
In response to the COVID-19 pandemic, the White House and a coalition of leading research groups have prepared the COVID-19 Open Research Dataset (CORD-19). CORD-19 is a resource of over 29,000 scholarly articles, including over 13,000 with full text, about COVID-19, SARS-CoV-2, and related coronaviruses.
Novel Corona Virus 2019 Dataset General/Infectious disease
From World Health Organization - On 31 December 2019, WHO was alerted to several cases of pneumonia in Wuhan City, Hubei Province of China.
This dataset has daily level information on the number of affected cases, deaths and recovery from 2019 novel coronavirus. Please note that this is a time series data and so the number of cases on any given day is the cumulative number.
The data is available from 22 Jan, 2020.
PHYSIONET General/Critical Care
One of the best sources of datasets in healthcare.Primarily from ICU patients.
- Clinical datasets such as MIMIC,eICU collaborative and Pediatic ICU datasets.
- Waveform datasets with ECG,EEG,arterial blood pressure waveform.
- ECG datasets with various pathophysiologic changes and drug interactions.
- Fetal datasets including sounds and ECG.
- Gait and Balance datasets include gait dynamics for patients with various neurodegenerative disorders.
- Neuro and Myoelectic datasets with EEG,EMG and evoked potential waveforms.
- Image datasets with Chest X-rays and MRI images.
- Computed Tomography Images for Intracranial Hemorrhage Detection and Segmentation
- Miscellaneous datasets with text, language,posture and other datasets.
ADNI Database Neurology/Imaging
Alzheimer's disease patient's imaging(MRI), clinical, genomic, and biomarker data for the purposes of scientific investigation, teaching, or planning clinical research studies.
RIM-ONE is a database for optic disc and cup segmentation evaluation by Medical Image Analysis group.
AmsterdamUMCdb critical care
Contains data related to 23,376 intensive care unit and high dependency unit admissions at Amsterdam University Medical Center of adult patients from 2003-2016.
The FDA Adverse Event Reporting System (FAERS) is a database that contains adverse event reports, medication error reports and product quality complaints resulting in adverse events that were submitted to FDA
MESSIDOR: Methods to Evaluate Segmentation and Indexing Techniques in the field of Retinal Ophthalmology ophthalmology
1200 Retinal image dataset with annotation.
A de-identified dataset of retinal fundus images for glaucoma analysis (RIGA) derived from three sources with 750 original images and 4500 manual marked images
High-Resolution Fundus (HRF) Image Database ophthalmology
The public database contains 15 images of healthy patients, 15 images of patients with diabetic retinopathy and 15 images of glaucomatous patients.
DR HAGIS: Diabetic Retinopathy, Hypertension, Age-related macular degeneration and Glacuoma ImageS ophthalmology
39 images for development of vessel extraction algorithms suitable for retinal screening programmes.
Polysomnography dataset from NSRR for sleep studies.Large collection of deidentified physiologic signals perfect for ML development.
Datasets from National Cancer Institute of over 54000 patients. They include data on participant characteristics, screening exam results, diagnostic procedures, lung cancer, and mortality. Images from over 75,000 CT screening exams are available. Over 1,200 pathology images from a subset of NLST lung cancer patients (~500 of over 2,000 patients) may be viewed.
The HAM10000 dataset dermatology
A large collection of multi-source dermatoscopic images of common pigmented skin lesions containing 10000 images.
Associated publication link below:
The HAM10000 dataset, a large collection of multi-source dermatoscopic images of common pigmented skin lesions
Philipp Tschandl, Cliff Rosendahl & Harald Kittler
UCI Machine Learning Repository general
This open source repository has more than 400 datasets including healthcare(100+) and non-healthcare ones in searchable and categorized format.
CMS datasets provide US Medicare and Medicaid datasets.
ResDAC(The Research Data Assistance Center) provides free support to users of CMS datasets.
Center for disease control's datasets.Useful for incidence,prevalance of various disorders and mortality data from across the US.
Agency for Healthcare Research and Quality's HCUP datasets used to identify, track, and analyze US national trends in health care utilization, access, charges, quality, and outcomes.
NHS datasets general
UK government's National Health services datasets.NHS choices datasets are useful for NLP and sentiment analysis both for GPs and hospitals.
OASIS Brain MRI dataset neuroimaging
Brain MRI datasets from Open Accesss series of Imaging Studies(OASIS).
A free and open platform for sharing MRI, MEG, EEG, iEEG, and ECoG data with over 200 datasets.
Cancer epidemiology data available through NCI's Surveillance,Epidemiology and End Result Program(SEER)
BROAD Institute's Cancer program datasets cancer and genomics
Cancer and genomics datasets.
A dataset of 14,000+ anonymized, radiologist labeled musculoskeletal X-rays from 12,000+ patients from Stanford ML group.
Read their article: https://arxiv.org/abs/1712.06957
1500+ knee MRI anonymized dataset from NYU.
Data science article collection general
An excellent collection of articles on data science.
eICU Collaborative Dataset critical care
eICU collaborative dataset of more than 130,000 patients across 300 hospitals.Deidentified dataset available for collaborative research includes vitals,clinical notes,APACHE score,diagnosis,treatment information and more.
Google Dataset Search general
Google's powerful search engine to assist with dataset search.
NIH CXR14 dataset imaging
Over 100,000 anonymized chest x-ray images and their corresponding data from more than 30,000 patients, including many with advanced lung disease.
NIH Deep Lesion imaging
NIH release of a dataset containing 32,000 CT scan images with annotated lesions belonging to 4400 unique patients.
Blue Button 2.0 general
A CMS initiative to democratize research and development using beneficiary data.Greater than 70 million patient dataset available.Learn more through links below:
National Institute of Health general
The link below is for NIH's strategic plan for data science in healthcare.A must read for anyone using data in healthcare for research and innovation.
NIH Clinical Center imaging
Largest open source Chest X-Ray data set available through NIH's clinical center.See the link in the article to access the data.Also available through GITHUB and KAGGLE.
Thanks to Andrew L. Beam and many other contributors on the GITHUB page.Visit via link below or through the BRAINX COMMUNITY on LinkedIn.
Kaggle is a good source for de-identified datasets in healthcare.Visit the page using link below and explore.
A biomedical data search engine which searches for datasets across registries.
A place to store, share or find data.A platform for biomedical research.
Detailed data repositories for biomedical research.